I migrated the lesser used applications to some DVD's. The problem being that I've lost the DVD for now.
However, why I didn't know this is a mystery. In OSX 10.5, you can just open all the PDF's you want to merge in the native OS Preview, click > View, Sidebar then doing this to each window, just drag the PDF into the Sidebar of one main document. Et voila, Save it off as a merged copy.
All is explained on Mac OSX hints So simple! I can't believe I didn't know this!